recipe bioconductor-crisprbwa

BWA-based alignment of CRISPR gRNA spacer sequences

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/crisprBwa.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-crisprbwa/meta.yaml

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bwa. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Currently not supported on Windows machines.

package bioconductor-crisprbwa

Versions:

1.2.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-crisprbase >=1.2.0,<1.3.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-rbwa >=1.2.0,<1.3.0

• r-base >=4.2,<4.3.0a0

• r-readr

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-crisprbwa

and update with:

conda update bioconductor-crisprbwa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-crisprbwa:<tag>

(see bioconductor-crisprbwa/tags for valid values for <tag>)

Download stats

Link to this page

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