recipe bioconductor-crisprverse

Easily install and load the crisprVerse ecosystem for CRISPR gRNA design

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/crisprVerse.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-crisprverse/meta.yaml

The crisprVerse is a modular ecosystem of R packages developed for the design and manipulation of CRISPR guide RNAs (gRNAs). All packages share a common language and design principles. This package is designed to make it easy to install and load the crisprVerse packages in a single step. To learn more about the crisprVerse, visit <https://www.github.com/crisprVerse>.

package bioconductor-crisprverse

versions:

1.4.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-crisprbase:

>=1.6.0,<1.7.0

depends bioconductor-crisprbowtie:

>=1.6.0,<1.7.0

depends bioconductor-crisprdesign:

>=1.4.0,<1.5.0

depends bioconductor-crisprscore:

>=1.6.0,<1.7.0

depends bioconductor-crisprscoredata:

>=1.6.0,<1.7.0

depends bioconductor-crisprviz:

>=1.4.0,<1.5.0

depends r-base:

>=4.3,<4.4.0a0

depends r-biocmanager:

depends r-cli:

depends r-rlang:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-crisprverse

and update with::

   mamba update bioconductor-crisprverse

To create a new environment, run:

mamba create --name myenvname bioconductor-crisprverse

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-crisprverse:<tag>

(see `bioconductor-crisprverse/tags`_ for valid values for ``<tag>``)

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