recipe bioconductor-cssq

Chip-seq Signal Quantifier Pipeline

Homepage

https://bioconductor.org/packages/3.11/bioc/html/CSSQ.html

License

Artistic-2.0

Recipe

/bioconductor-cssq/meta.yaml

This package is desgined to perform statistical analysis to identify statistically significant differentially bound regions between multiple groups of ChIP-seq dataset.

package bioconductor-cssq

Versions

1.0.0-0

Depends

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-ggplot2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cssq

and update with:

conda update bioconductor-cssq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cssq:<tag>

(see bioconductor-cssq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cssq/README.html)