recipe bioconductor-cssq

Chip-seq Signal Quantifier Pipeline

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/CSSQ.html

License:

Artistic-2.0

Recipe:

/bioconductor-cssq/meta.yaml

This package is desgined to perform statistical analysis to identify statistically significant differentially bound regions between multiple groups of ChIP-seq dataset.

package bioconductor-cssq

Versions:

1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cssq

and update with:

conda update bioconductor-cssq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cssq:<tag>

(see bioconductor-cssq/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cssq/README.html)