recipe bioconductor-cssq

Chip-seq Signal Quantifier Pipeline

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/CSSQ.html

License:

Artistic-2.0

Recipe:

/bioconductor-cssq/meta.yaml

This package is desgined to perform statistical analysis to identify statistically significant differentially bound regions between multiple groups of ChIP-seq dataset.

package bioconductor-cssq

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cssq

and update with:

conda update bioconductor-cssq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cssq:<tag>

(see bioconductor-cssq/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cssq/README.html)