- recipe bioconductor-ctrap
Identification of candidate causal perturbations from differential gene expression data
- Homepage
- License
MIT + file LICENSE
- Recipe
Compare differential gene expression results with those from known cellular perturbations (such as gene knock-down, overexpression or small molecules) derived from the Connectivity Map. Such analyses allow not only to infer the molecular causes of the observed difference in gene expression but also to identify small molecules that could drive or revert specific transcriptomic alterations.
- package bioconductor-ctrap¶
-
- Versions
1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.3-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-annotationhub
>=3.2.0,<3.3.0
bioconductor-fgsea
>=1.20.0,<1.21.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-rhdf5
>=2.38.0,<2.39.0
r-base
>=4.1,<4.2.0a0
r-shiny
>=1.7.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ctrap
and update with:
conda update bioconductor-ctrap
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ctrap:<tag>
(see bioconductor-ctrap/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ctrap/README.html)