recipe bioconductor-curatedtbdata

Curation of existing 49 tuberculosis transcriptomic studies

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/curatedTBData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-curatedtbdata/meta.yaml

The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.

package bioconductor-curatedtbdata

Versions:

1.4.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-multiassayexperiment >=1.24.0,<1.25.0

• curl

• r-base >=4.2,<4.3.0a0

• r-rlang

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-curatedtbdata

and update with:

conda update bioconductor-curatedtbdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-curatedtbdata:<tag>

(see bioconductor-curatedtbdata/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-curatedtbdata/README.html)