recipe bioconductor-dada2

The dada2 package infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.

Links:biotools: dada2
package bioconductor-dada2

(downloads) docker_bioconductor-dada2


1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-1, 1.4.0-0, 1.4-0, 1.2-0, 1.0.3-0, 0.99.10-0, 0.10.4-0, 0.10.3-0, 0.10.1-0, 0.10.0-0

Required By:


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dada2

and update with:

conda update bioconductor-dada2

or use the docker container:

docker pull<tag>

(see bioconductor-dada2/tags for valid values for <tag>)