bioconductor-dada2

downloads

The dada2 package infers exact sequence variants (SVs) from amplicon data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier.

Home http://bioconductor.org/packages/3.5/bioc/html/dada2.html
Versions 0.10.0, 0.10.1, 0.10.3, 0.10.4, 0.99.10, 1.0.3, 1.2, 1.4, 1.4.0
License LGPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-dada2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dada2

and update with:

conda update bioconductor-dada2

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-dada2.