bioconductor-dada2

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The dada2 package provides “OTU picking” functionality, but instead of picking OTUs the DADA2 algorithm exactly infers samples sequences. The dada2 pipeline starts from demultiplexed fastq files, and outputs inferred sample sequences and associated abundances after removing substitution and chimeric errors. Taxonomic classification is also available via a native implementation of the RDP classifier method.

Home http://bioconductor.org/packages/release/bioc/html/dada2.html
Versions 0.10.0, 0.10.1, 0.10.3, 0.10.4, 0.99.10, 1.0.3, 1.2
License LGPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-dada2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dada2

and update with:

conda update bioconductor-dada2

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-dada2.