recipe bioconductor-damefinder

Finds DAMEs - Differential Allelicly MEthylated regions

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DAMEfinder.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-damefinder/meta.yaml

'DAMEfinder' offers functionality for taking methtuple or bismark outputs to calculate ASM scores and compute DAMEs. It also offers nice visualization of methyl-circle plots.

package bioconductor-damefinder

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.1-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bumphunter >=1.40.0,<1.41.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-cowplot

• r-ggplot2

• r-plyr

• r-readr

• r-reshape2

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-damefinder

and update with:

conda update bioconductor-damefinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-damefinder:<tag>

(see bioconductor-damefinder/tags for valid values for <tag>)

Download stats

Link to this page

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