Package Recipe 'bioconductor-dasper'

recipe bioconductor-dasper

Detecting abberant splicing events from RNA-sequencing data

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/dasper.html
License:: Artistic-2.0
Recipe:: /bioconductor-dasper/meta.yaml

The aim of dasper is to detect aberrant splicing events from RNA-seq data. dasper will use as input both junction and coverage data from RNA-seq to calculate the deviation of each splicing event in a patient from a set of user-defined controls. dasper uses an unsupervised outlier detection algorithm to score each splicing event in the patient with an outlier score representing the degree to which that splicing event looks abnormal.

package bioconductor-dasper¶

Versions:

1.7.0-0, 1.4.0-0, 1.2.0-0, 1.0.0-2, 1.0.0-1

Depends:

bioconductor-basilisk >=1.9.0,<1.10.0
bioconductor-biocfilecache >=2.6.0,<2.7.0
bioconductor-biocparallel >=1.32.0,<1.33.0
bioconductor-genomeinfodb >=1.34.0,<1.35.0
bioconductor-genomicfeatures >=1.50.0,<1.51.0
bioconductor-genomicranges >=1.50.0,<1.51.0
bioconductor-iranges >=2.32.0,<2.33.0
bioconductor-megadepth >=1.8.0,<1.9.0
bioconductor-plyranges >=1.18.0,<1.19.0
bioconductor-rtracklayer >=1.58.0,<1.59.0
bioconductor-s4vectors >=0.36.0,<0.37.0
bioconductor-summarizedexperiment >=1.28.0,<1.29.0
r-base >=4.2,<4.3.0a0
r-data.table
r-dplyr
r-ggplot2
r-ggpubr
r-ggrepel
r-magrittr
r-readr
r-reticulate
r-stringr
r-tidyr

Required By:

bioconductor-oder

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dasper

and update with:

conda update bioconductor-dasper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dasper:<tag>

(see bioconductor-dasper/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-dasper/README.html)