- recipe bioconductor-dearseq
Differential Expression Analysis for RNA-seq data through a robust variance component test
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/dearseq.html
- License:
GPL-2 | file LICENSE
- Recipe:
Differential Expression Analysis RNA-seq data with variance component score test accounting for data heteroscedasticity through precision weights. Perform both gene-wise and gene set analyses, and can deal with repeated or longitudinal data. Methods are detailed in: i) Agniel D & Hejblum BP (2017) Variance component score test for time-course gene set analysis of longitudinal RNA-seq data, Biostatistics, 18(4):589-604 ; and ii) Gauthier M, Agniel D, Thiébaut R & Hejblum BP (2020) dearseq: a variance component score test for RNA-Seq differential analysis that effectively controls the false discovery rate, NAR Genomics and Bioinformatics, 2(4):lqaa093.
- package bioconductor-dearseq¶
-
- Versions:
1.10.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-dearseq
and update with:
conda update bioconductor-dearseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dearseq:<tag>
(see bioconductor-dearseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dearseq/README.html)