recipe bioconductor-dearseq

Differential Expression Analysis for RNA-seq data through a robust variance component test

Homepage

https://bioconductor.org/packages/3.11/bioc/html/dearseq.html

License

GPL-2 | file LICENSE

Recipe

/bioconductor-dearseq/meta.yaml

Differential Expression Analysis RNA-seq data with variance component score test accounting for data heteroscedasticity through precision weights. Perform both gene-wise and gene set analyses, and can deal with repeated or longitudinal data. Methods are detailed in: Agniel D & Hejblum BP (2017) Variance component score test for time-course gene set analysis of longitudinal RNA-seq data, Biostatistics, 18(4):589-604. and Gauthier M, Agniel D, Thiébaut R & Hejblum BP (2019). dearseq: a variance component score test for RNA-Seq differential analysis that effectively controls the false discovery rate, *bioRxiv* 635714.

package bioconductor-dearseq

(downloads) docker_bioconductor-dearseq

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dearseq

and update with:

conda update bioconductor-dearseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dearseq:<tag>

(see bioconductor-dearseq/tags for valid values for <tag>)