recipe bioconductor-decomptumor2sig

Uses quadratic programming for signature refitting, i.e., to decompose the mutation catalog from an individual tumor sample into a set of given mutational signatures (either Alexandrov-model signatures or Shiraishi-model signatures), computing weights that reflect the contributions of the signatures to the mutation load of the tumor.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/decompTumor2Sig.html

License

GPL-2

Recipe

/bioconductor-decomptumor2sig/meta.yaml

package bioconductor-decomptumor2sig

(downloads) docker_bioconductor-decomptumor2sig

Versions

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-decomptumor2sig

and update with:

conda update bioconductor-decomptumor2sig

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-decomptumor2sig:<tag>

(see bioconductor-decomptumor2sig/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-decomptumor2sig/README.html)