recipe bioconductor-deconvr

Simulation and Deconvolution of Omic Profiles

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/deconvR.html

License:

Artistic-2.0

Recipe:

/bioconductor-deconvr/meta.yaml

This package provides a collection of functions designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model. Users are given the option to create or extend a reference atlas and,also simulate the desired size of the bulk signature profile of the reference cell types.The package includes the cell-type-specific methylation atlas and, Illumina Epic B5 probe ids that can be used in deconvolution. Additionally,we included BSmeth2Probe, to make mapping WGBS data to their probe IDs easier.

package bioconductor-deconvr

(downloads) docker_bioconductor-deconvr

Versions:

1.0.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-deconvr

and update with:

conda update bioconductor-deconvr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-deconvr:<tag>

(see bioconductor-deconvr/tags for valid values for <tag>)

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