recipe bioconductor-deformats

Differential gene expression data formats converter

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DEFormats.html

License:

GPL-3

Recipe:

/bioconductor-deformats/meta.yaml

Links:

biotools: deformats, doi: 10.1038/nmeth.3252

Convert between different data formats used by differential gene expression analysis tools.

package bioconductor-deformats

Versions:

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0, 

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0,  1.8.0-0,  1.6.1-0

Depends:

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-checkmate

• r-data.table

Required By:

• bioconductor-regionreport

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-deformats

and update with:

conda update bioconductor-deformats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-deformats:<tag>

(see bioconductor-deformats/tags for valid values for <tag>)

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