recipe bioconductor-deformats

Convert between different data formats used by differential gene expression analysis tools.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DEFormats.html

License

GPL-3

Recipe

/bioconductor-deformats/meta.yaml

Links

biotools: deformats, doi: 10.1038/nmeth.3252

package bioconductor-deformats

(downloads) docker_bioconductor-deformats

Versions

1.10.0-0, 1.8.0-0, 1.6.1-0

Depends bioconductor-deseq2

>=1.22.0,<1.23.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-checkmate

Depends r-data.table

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-deformats

and update with:

conda update bioconductor-deformats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-deformats:<tag>

(see bioconductor-deformats/tags for valid values for <tag>)