- recipe bioconductor-degnorm
DegNorm: degradation normalization for RNA-seq data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/DegNorm.html
- License:
LGPL (>= 3)
- Recipe:
This package performs degradation normalization in bulk RNA-seq data to improve differential expression analysis accuracy.
- package bioconductor-degnorm¶
-
- Versions:
1.8.0-0
,1.4.0-2
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-2
,1.0.0-1
- Depends:
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-rcpp
>=1.0.2
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-degnorm
and update with:
conda update bioconductor-degnorm
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-degnorm:<tag>
(see bioconductor-degnorm/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-degnorm/README.html)