recipe bioconductor-degnorm

DegNorm: degradation normalization for RNA-seq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DegNorm.html

License:

LGPL (>= 3)

Recipe:

/bioconductor-degnorm/meta.yaml

This package performs degradation normalization in bulk RNA-seq data to improve differential expression analysis accuracy.

package bioconductor-degnorm

Versions:

1.8.0-0,  1.4.0-2,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1

Depends:

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-doparallel

• r-foreach

• r-ggplot2

• r-heatmaply

• r-plotly

• r-plyr

• r-rcpp >=1.0.2

• r-rcpparmadillo

• r-viridis

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-degnorm

and update with:

conda update bioconductor-degnorm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-degnorm:<tag>

(see bioconductor-degnorm/tags for valid values for <tag>)

Download stats

Link to this page

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