- recipe bioconductor-degreport
Report of DEG analysis
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/DEGreport.html
- License
MIT + file LICENSE
- Recipe
- Links
biotools: degreport, doi: 10.1038/nmeth.3252
Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.
- package bioconductor-degreport¶
-
- Versions
1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.19.1-0
,1.18.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.19.1-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.8.2-1
,1.8.2-0
,1.7.2-1
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-complexheatmap
>=2.10.0,<2.11.0
bioconductor-consensusclusterplus
>=1.58.0,<1.59.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-degreport
and update with:
conda update bioconductor-degreport
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-degreport:<tag>
(see bioconductor-degreport/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-degreport/README.html)