bioconductor-degreport

downloads

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

Home http://bioconductor.org/packages/3.5/bioc/html/DEGreport.html
Versions 1.7.2, 1.8.2
License GPL (>=2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-degreport

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-degreport

and update with:

conda update bioconductor-degreport

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-degreport.