- recipe bioconductor-delayeddataframe
Delayed operation on DataFrame using standard DataFrame metaphor
Based on the standard DataFrame metaphor, we are trying to implement the feature of delayed operation on the DelayedDataFrame, with a slot of lazyIndex, which saves the mapping indexes for each column of DelayedDataFrame. Methods like show, validity check, [/[[ subsetting, rbind/cbind are implemented for DelayedDataFrame to be operated around lazyIndex. The listData slot stays untouched until a realization call e.g., DataFrame constructor OR as.list() is invoked.
- package bioconductor-delayeddataframe¶
- depends bioconductor-biocgenerics:
- depends bioconductor-delayedarray:
- depends bioconductor-s4vectors:
- depends r-base:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-delayeddataframe and update with:: mamba update bioconductor-delayeddataframe
To create a new environment, run:
mamba create --name myenvname bioconductor-delayeddataframe
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-delayeddataframe:<tag> (see `bioconductor-delayeddataframe/tags`_ for valid values for ``<tag>``)