recipe bioconductor-delayeddataframe

Delayed operation on DataFrame using standard DataFrame metaphor

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/DelayedDataFrame.html

License:

GPL-3

Recipe:

/bioconductor-delayeddataframe/meta.yaml

Based on the standard DataFrame metaphor, we are trying to implement the feature of delayed operation on the DelayedDataFrame, with a slot of lazyIndex, which saves the mapping indexes for each column of DelayedDataFrame. Methods like show, validity check, [/[[ subsetting, rbind/cbind are implemented for DelayedDataFrame to be operated around lazyIndex. The listData slot stays untouched until a realization call e.g., DataFrame constructor OR as.list() is invoked.

package bioconductor-delayeddataframe

(downloads) docker_bioconductor-delayeddataframe

versions:

1.16.0-0,  1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

depends bioconductor-biocgenerics:

>=0.46.0,<0.47.0

depends bioconductor-delayedarray:

>=0.26.0,<0.27.0

depends bioconductor-s4vectors:

>=0.38.0,<0.39.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-delayeddataframe

and update with::

   mamba update bioconductor-delayeddataframe

To create a new environment, run:

mamba create --name myenvname bioconductor-delayeddataframe

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-delayeddataframe:<tag>

(see `bioconductor-delayeddataframe/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-delayeddataframe/README.html)