recipe bioconductor-deltacapturec

This Package Discovers Meso-scale Chromatin Remodeling from 3C Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/deltaCaptureC.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-deltacapturec/meta.yaml

This package discovers meso-scale chromatin remodelling from 3C data. 3C data is local in nature. It givens interaction counts between restriction enzyme digestion fragments and a preferred 'viewpoint' region. By binning this data and using permutation testing, this package can test whether there are statistically significant changes in the interaction counts between the data from two cell types or two treatments.

package bioconductor-deltacapturec

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-tictoc

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-deltacapturec

and update with:

conda update bioconductor-deltacapturec

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-deltacapturec:<tag>

(see bioconductor-deltacapturec/tags for valid values for <tag>)

Download stats

Link to this page

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