- recipe bioconductor-deltacapturec
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/deltaCaptureC.html
- License:
MIT + file LICENSE
- Recipe:
This package discovers meso-scale chromatin remodelling from 3C data. 3C data is local in nature. It givens interaction counts between restriction enzyme digestion fragments and a preferred 'viewpoint' region. By binning this data and using permutation testing, this package can test whether there are statistically significant changes in the interaction counts between the data from two cell types or two treatments.
- package bioconductor-deltacapturec¶
-
- Versions:
1.12.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-deseq2
>=1.38.0,<1.39.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-deltacapturec
and update with:
conda update bioconductor-deltacapturec
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-deltacapturec:<tag>
(see bioconductor-deltacapturec/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-deltacapturec/README.html)