recipe bioconductor-demixt

Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms

Homepage

https://bioconductor.org/packages/3.10/bioc/html/DeMixT.html

License

GPL-3

Recipe

/bioconductor-demixt/meta.yaml

DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.

package bioconductor-demixt

(downloads) docker_bioconductor-demixt

Versions

1.2.0-0, 1.0.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-demixt

and update with:

conda update bioconductor-demixt

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-demixt:<tag>

(see bioconductor-demixt/tags for valid values for <tag>)