recipe bioconductor-derfinder

This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package: (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/derfinder.html

License

Artistic-2.0

Recipe

/bioconductor-derfinder/meta.yaml

Links

biotools: derfinder

package bioconductor-derfinder

(downloads) docker_bioconductor-derfinder

Versions

1.16.1-0, 1.14.0-0, 1.12.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-derfinder

and update with:

conda update bioconductor-derfinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-derfinder:<tag>

(see bioconductor-derfinder/tags for valid values for <tag>)