recipe bioconductor-descan2

Differential Enrichment Scan 2

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DEScan2.html

License:

Artistic-2.0

Recipe:

/bioconductor-descan2/meta.yaml

Integrated peak and differential caller, specifically designed for broad epigenomic signals.

package bioconductor-descan2

Versions:

1.18.0-0,  1.14.1-1,  1.14.1-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0, 

1.18.0-0,  1.14.1-1,  1.14.1-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-chippeakanno >=3.32.0,<3.33.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-glue

• r-plyr

• r-rcpp >=0.12.13

• r-rcpparmadillo

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-descan2

and update with:

conda update bioconductor-descan2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-descan2:<tag>

(see bioconductor-descan2/tags for valid values for <tag>)

Download stats

Link to this page

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