recipe bioconductor-descan2

Integrated peak and differential caller, specifically designed for broad epigenomic signals.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DEScan2.html

License

Artistic-2.0

Recipe

/bioconductor-descan2/meta.yaml

package bioconductor-descan2

(downloads) docker_bioconductor-descan2

Versions

1.2.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-chippeakanno

>=3.16.0,<3.17.0

Depends bioconductor-delayedarray

>=0.8.0,<0.9.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-data.table

Depends r-glue

Depends r-plyr

Depends r-rcpp

>=0.12.13

Depends r-rcpparmadillo

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-descan2

and update with:

conda update bioconductor-descan2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-descan2:<tag>

(see bioconductor-descan2/tags for valid values for <tag>)