recipe bioconductor-deseq2

Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DESeq2.html

License

LGPL (>= 3)

Recipe

/bioconductor-deseq2/meta.yaml

Links

biotools: deseq2, doi: 10.1186/s13059-014-0550-8

package bioconductor-deseq2

(downloads) docker_bioconductor-deseq2

Versions

1.22.1-0, 1.20.0-0, 1.18.1-1, 1.18.0-0, 1.16.1-3, 1.16.1-2, 1.16.1-0, 1.14.1-0, 1.12.4-5, 1.12.4-4, 1.12.4-3, 1.12.4-2, 1.12.4-1, 1.10.1-0, 1.10.0-1, 1.10.0-0, 1.8.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-deseq2

and update with:

conda update bioconductor-deseq2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-deseq2:<tag>

(see bioconductor-deseq2/tags for valid values for <tag>)