recipe bioconductor-dexma

Differential Expression Meta-Analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/DExMA.html

License

GPL-2

Recipe

/bioconductor-dexma/meta.yaml

performing all the steps of gene expression meta-analysis without eliminating those genes that are presented in at least two datasets. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO data sets and show graphical representations of the results.

package bioconductor-dexma

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-dexmadata >=1.2.0,<1.3.0

• bioconductor-geoquery >=2.62.0,<2.63.0

• bioconductor-impute >=1.68.0,<1.69.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-snpstats >=1.44.0,<1.45.0

• bioconductor-sva >=3.42.0,<3.43.0

• r-base >=4.1,<4.2.0a0

• r-pheatmap

• r-plyr

• r-scales

• r-swamp

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dexma

and update with:

conda update bioconductor-dexma

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dexma:<tag>

(see bioconductor-dexma/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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