bioconductor-dexseq

downloads

The package is focused on finding differential exon usage using RNA-seq exon counts between samples with different experimental designs. It provides functions that allows the user to make the necessary statistical tests based on a model that uses the negative binomial distribution to estimate the variance between biological replicates and generalized linear models for testing. The package also provides functions for the visualization and exploration of the results.

Home http://bioconductor.org/packages/release/bioc/html/DEXSeq.html
Versions 1.16.6, 1.18.4, 1.20.1
License GPL (>= 3)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-dexseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dexseq

and update with:

conda update bioconductor-dexseq

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-dexseq.