- recipe bioconductor-diffbind
Differential Binding Analysis of ChIP-Seq Peak Data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/DiffBind.html
- License:
Artistic-2.0
- Recipe:
- Links:
Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.
- package bioconductor-diffbind¶
-
- Versions:
3.8.0-0
,3.4.11-1
,3.4.11-0
,3.4.0-0
,3.2.7-0
,3.2.1-0
,3.0.15-0
,3.0.3-0
,2.16.0-2
,3.8.0-0
,3.4.11-1
,3.4.11-0
,3.4.0-0
,3.2.7-0
,3.2.1-0
,3.0.15-0
,3.0.3-0
,2.16.0-2
,2.16.0-1
,2.16.0-0
,2.14.0-0
,2.12.0-1
,2.10.0-1
,2.10.0-0
,2.8.0-0
,2.6.6-0
,2.6.5-0
,2.6.0-0
,2.4.8-16
,2.2.12-1
,2.2.12-0
,2.0.9-3
,2.0.9-2
,1.16.3-0
- Depends:
bioconductor-apeglm
>=1.20.0,<1.21.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-deseq2
>=1.38.0,<1.39.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-greylistchip
>=1.30.0,<1.31.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-rhtslib
>=2.0.0,<2.1.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-systempiper
>=2.4.0,<2.5.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-diffbind
and update with:
conda update bioconductor-diffbind
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-diffbind:<tag>
(see bioconductor-diffbind/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-diffbind/README.html)