recipe bioconductor-diffhic

Differential Analyis of Hi-C Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/diffHic.html

License:

GPL-3

Recipe:

/bioconductor-diffhic/meta.yaml

Detects differential interactions across biological conditions in a Hi-C experiment. Methods are provided for read alignment and data pre-processing into interaction counts. Statistical analysis is based on edgeR and supports normalization and filtering. Several visualization options are also available.

package bioconductor-diffhic

(downloads) docker_bioconductor-diffhic

Versions:
1.30.0-01.26.0-21.26.0-11.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-0

1.30.0-01.26.0-21.26.0-11.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-11.14.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-diffhic

and update with:

conda update bioconductor-diffhic

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-diffhic:<tag>

(see bioconductor-diffhic/tags for valid values for <tag>)

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