recipe bioconductor-discorhythm

Interactive Workflow for Discovering Rhythmicity in Biological Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DiscoRhythm.html

License:

GPL-3

Recipe:

/bioconductor-discorhythm/meta.yaml

Set of functions for estimation of cyclical characteristics, such as period, phase, amplitude, and statistical significance in large temporal datasets. Supporting functions are available for quality control, dimensionality reduction, spectral analysis, and analysis of experimental replicates. Contains a R Shiny web interface to execute all workflow steps.

package bioconductor-discorhythm

Versions:

1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.0.0-1

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocstyle >=2.26.0,<2.27.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• pandoc

• r-base >=4.2,<4.3.0a0

• r-broom

• r-data.table

• r-dplyr

• r-dt

• r-ggextra

• r-ggplot2

• r-gridextra

• r-heatmaply

• r-kableextra

• r-knitr

• r-magick

• r-matrixstats

• r-matrixtests

• r-metacycle >=1.2.0

• r-plotly

• r-reshape2

• r-rmarkdown

• r-shiny

• r-shinybs

• r-shinycssloaders

• r-shinydashboard

• r-shinyjs

• r-upsetr

• r-venndiagram

• r-viridis

• r-zip

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-discorhythm

and update with:

conda update bioconductor-discorhythm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-discorhythm:<tag>

(see bioconductor-discorhythm/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-discorhythm/README.html)