recipe bioconductor-dmrcaller

Differentially Methylated Regions caller

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/DMRcaller.html

License:

GPL-3

Recipe:

/bioconductor-dmrcaller/meta.yaml

Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.

package bioconductor-dmrcaller

(downloads) docker_bioconductor-dmrcaller

Versions:
1.26.0-21.26.0-11.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-1

1.26.0-21.26.0-11.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-01.16.0-11.14.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dmrcaller

and update with:

conda update bioconductor-dmrcaller

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dmrcaller:<tag>

(see bioconductor-dmrcaller/tags for valid values for <tag>)

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