- recipe bioconductor-dmrcaller
Differentially Methylated Regions caller
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/DMRcaller.html
- License:
GPL-3
- Recipe:
Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.
- package bioconductor-dmrcaller¶
-
- Versions:
1.30.0-0
,1.26.0-2
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.30.0-0
,1.26.0-2
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-0
- Depends:
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-dmrcaller
and update with:
conda update bioconductor-dmrcaller
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dmrcaller:<tag>
(see bioconductor-dmrcaller/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dmrcaller/README.html)