recipe bioconductor-dmrcate

De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulphite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DMRcate.html

License

file LICENSE

Recipe

/bioconductor-dmrcate/meta.yaml

Links

biotools: dmrcate

package bioconductor-dmrcate

(downloads) docker_bioconductor-dmrcate

Versions

1.18.0-0, 1.16.0-0, 1.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dmrcate

and update with:

conda update bioconductor-dmrcate

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dmrcate:<tag>

(see bioconductor-dmrcate/tags for valid values for <tag>)