recipe bioconductor-dmrforpairs

DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DMRforPairs.html

License:

GPL (>= 2)

Recipe:

/bioconductor-dmrforpairs/meta.yaml

DMRforPairs (formerly DMR2+) allows researchers to compare n>=2 unique samples with regard to their methylation profile. The (pairwise) comparison of n unique single samples distinguishes DMRforPairs from other existing pipelines as these often compare groups of samples in either single CpG locus or region based analysis. DMRforPairs defines regions of interest as genomic ranges with sufficient probes located in close proximity to each other. Probes in one region are optionally annotated to the same functional class(es). Differential methylation is evaluated by comparing the methylation values within each region between individual samples and (if the difference is sufficiently large), testing this difference formally for statistical significance.

package bioconductor-dmrforpairs

Versions:

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-gviz >=1.42.0,<1.43.0

• r-base >=4.2,<4.3.0a0

• r-r2html >=2.2.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dmrforpairs

and update with:

conda update bioconductor-dmrforpairs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dmrforpairs:<tag>

(see bioconductor-dmrforpairs/tags for valid values for <tag>)

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