recipe bioconductor-dmrscan

Detection of Differentially Methylated Regions

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DMRScan.html

License:

GPL-3

Recipe:

/bioconductor-dmrscan/meta.yaml

This package detects significant differentially methylated regions (for both qualitative and quantitative traits), using a scan statistic with underlying Poisson heuristics. The scan statistic will depend on a sequence of window sizes (# of CpGs within each window) and on a threshold for each window size. This threshold can be calculated by three different means: i) analytically using Siegmund et.al (2012) solution (preferred), ii) an important sampling as suggested by Zhang (2008), and a iii) full MCMC modeling of the data, choosing between a number of different options for modeling the dependency between each CpG.

package bioconductor-dmrscan

(downloads) docker_bioconductor-dmrscan

Versions:

1.20.0-01.16.0-01.14.0-01.12.0-11.12.0-01.11.0-01.10.0-11.10.0-01.8.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dmrscan

and update with:

conda update bioconductor-dmrscan

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dmrscan:<tag>

(see bioconductor-dmrscan/tags for valid values for <tag>)

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