- recipe bioconductor-dmrscan
Detection of Differentially Methylated Regions
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/DMRScan.html
- License:
GPL-3
- Recipe:
This package detects significant differentially methylated regions (for both qualitative and quantitative traits), using a scan statistic with underlying Poisson heuristics. The scan statistic will depend on a sequence of window sizes (# of CpGs within each window) and on a threshold for each window size. This threshold can be calculated by three different means: i) analytically using Siegmund et.al (2012) solution (preferred), ii) an important sampling as suggested by Zhang (2008), and a iii) full MCMC modeling of the data, choosing between a number of different options for modeling the dependency between each CpG.
- package bioconductor-dmrscan¶
-
- Versions:
1.20.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.11.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
- Depends:
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-dmrscan
and update with:
conda update bioconductor-dmrscan
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dmrscan:<tag>
(see bioconductor-dmrscan/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dmrscan/README.html)