recipe bioconductor-dnabarcodecompatibility

The package allows one to obtain optimised combinations of DNA barcodes to be used for multiplex sequencing. In each barcode combination, barcodes are pooled with respect to Illumina chemistry constraints. Combinations can be filtered to keep those that are robust against substitution and insertion/deletion errors thereby facilitating the demultiplexing step. In addition, the package provides an optimiser function to further favor the selection of barcode combinations with least heterogeneity in barcode usage.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DNABarcodeCompatibility.html

License

file LICENSE

Recipe

/bioconductor-dnabarcodecompatibility/meta.yaml

package bioconductor-dnabarcodecompatibility

(downloads) docker_bioconductor-dnabarcodecompatibility

Versions

1.0.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dnabarcodecompatibility

and update with:

conda update bioconductor-dnabarcodecompatibility

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dnabarcodecompatibility:<tag>

(see bioconductor-dnabarcodecompatibility/tags for valid values for <tag>)