recipe bioconductor-dnabarcodes

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

Homepage

https://bioconductor.org/packages/3.10/bioc/html/DNABarcodes.html

License

GPL-2

Recipe

/bioconductor-dnabarcodes/meta.yaml

Links

biotools: dnabarcodes

The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.

package bioconductor-dnabarcodes

(downloads) docker_bioconductor-dnabarcodes

Versions

1.16.0-0, 1.14.0-1, 1.14.0-0, 1.12.0-0, 1.10.0-0, 1.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dnabarcodes

and update with:

conda update bioconductor-dnabarcodes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dnabarcodes:<tag>

(see bioconductor-dnabarcodes/tags for valid values for <tag>)