recipe bioconductor-dnacopy

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DNAcopy.html

License

GPL (>= 2)

Recipe

/bioconductor-dnacopy/meta.yaml

Links

biotools: dnacopy, doi: 10.1038/nmeth.3252

package bioconductor-dnacopy

(downloads) docker_bioconductor-dnacopy

Versions

1.58.0-0, 1.56.0-0, 1.54.0-0, 1.52.0-0, 1.50.1-0, 1.48.0-1, 1.48.0-0, 1.46.0-0, 1.44.0-0

Depends
  • libgcc-ng >=7.3.0

  • libgfortran-ng >=7,<8.0a0

  • r-base >=3.5.1,<3.5.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dnacopy

and update with:

conda update bioconductor-dnacopy

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dnacopy:<tag>

(see bioconductor-dnacopy/tags for valid values for <tag>)