recipe bioconductor-dnafusion

Identification of gene fusions using paired-end sequencing

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DNAfusion.html

License:

GPL-3

Recipe:

/bioconductor-dnafusion/meta.yaml

Paired-end sequencing of cfDNA generated BAM files can be used as input to discover EML4-ALK variants. This package was developed using position deduplicated BAM files generated with the AVENIO Oncology Analysis Software. These files are made using the AVENIO ctDNA surveillance kit and Illumina Nextseq 500 sequencing. This is a targeted hybridization NGS approach and includes ALK-specific but not EML4-specific probes.

package bioconductor-dnafusion

Versions:

1.0.0-0

Depends:

• bioconductor-bamsignals >=1.30.0,<1.31.0

• bioconductor-biocbaseutils >=1.0.0,<1.1.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dnafusion

and update with:

conda update bioconductor-dnafusion

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dnafusion:<tag>

(see bioconductor-dnafusion/tags for valid values for <tag>)

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