- recipe bioconductor-dnafusion
Identification of gene fusions using paired-end sequencing
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/DNAfusion.html
- License:
GPL-3
- Recipe:
Paired-end sequencing of cfDNA generated BAM files can be used as input to discover EML4-ALK variants. This package was developed using position deduplicated BAM files generated with the AVENIO Oncology Analysis Software. These files are made using the AVENIO ctDNA surveillance kit and Illumina Nextseq 500 sequencing. This is a targeted hybridization NGS approach and includes ALK-specific but not EML4-specific probes.
- package bioconductor-dnafusion¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-bamsignals
>=1.30.0,<1.31.0
bioconductor-biocbaseutils
>=1.0.0,<1.1.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-dnafusion
and update with:
conda update bioconductor-dnafusion
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dnafusion:<tag>
(see bioconductor-dnafusion/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dnafusion/README.html)