recipe bioconductor-doppelgangr

Identify likely duplicate samples from genomic or meta-data

Homepage

https://bioconductor.org/packages/3.10/bioc/html/doppelgangR.html

License

GPL (>=2.0)

Recipe

/bioconductor-doppelgangr/meta.yaml

Links

biotools: doppelgangr, doi: 10.1093/jnci/djw146

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and “smoking guns” - supposedly unique identifiers found in pData(eset).

package bioconductor-doppelgangr

(downloads) docker_bioconductor-doppelgangr

Versions

1.14.0-0, 1.12.0-1, 1.10.1-0, 1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-doppelgangr

and update with:

conda update bioconductor-doppelgangr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-doppelgangr:<tag>

(see bioconductor-doppelgangr/tags for valid values for <tag>)