This package implements five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring semantic similarities among DO terms and gene products. Enrichment analyses including hypergeometric model and gene set enrichment analysis are also implemented for discovering disease associations of high-throughput biological data.
|Versions||2.10.6, 2.10.7, 2.8.2, 2.8.3|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-dose
and update with:
conda update bioconductor-dose
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-dose.