- recipe bioconductor-dss
Dispersion shrinkage for sequencing data
- Homepage:
- License:
GPL
- Recipe:
- Links:
biotools: dss
DSS is an R library performing differntial analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core of DSS is a new dispersion shrinkage method for estimating the dispersion parameter from Gamma-Poisson or Beta-Binomial distributions.
- package bioconductor-dss¶
-
- Versions:
2.46.0-1
,2.46.0-0
,2.42.0-2
,2.42.0-1
,2.42.0-0
,2.40.0-0
,2.38.0-1
,2.38.0-0
,2.36.0-0
,2.46.0-1
,2.46.0-0
,2.42.0-2
,2.42.0-1
,2.42.0-0
,2.40.0-0
,2.38.0-1
,2.38.0-0
,2.36.0-0
,2.34.0-0
,2.32.0-1
,2.30.0-0
,2.28.0-0
,2.26.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-bsseq
>=1.34.0,<1.35.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-dss
and update with:
conda update bioconductor-dss
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dss:<tag>
(see bioconductor-dss/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dss/README.html)