recipe bioconductor-dss

Dispersion shrinkage for sequencing data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/DSS.html

License

GPL

Recipe

/bioconductor-dss/meta.yaml

Links

biotools: dss

DSS is an R library performing differntial analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core of DSS is a new dispersion shrinkage method for estimating the dispersion parameter from Gamma-Poisson or Beta-Binomial distributions.

package bioconductor-dss

Versions

2.42.0-1,  2.42.0-0,  2.40.0-0,  2.38.0-1,  2.38.0-0,  2.36.0-0,  2.34.0-0,  2.32.0-1,  2.30.0-0, 

2.42.0-1,  2.42.0-0,  2.40.0-0,  2.38.0-1,  2.38.0-0,  2.36.0-0,  2.34.0-0,  2.32.0-1,  2.30.0-0,  2.28.0-0,  2.26.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-bsseq >=1.30.0,<1.31.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-metaseqr2

• bioconductor-methcp

• bioconductor-methylsig

• bioconductor-kissde

• bioconductor-dmrcate

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dss

and update with:

conda update bioconductor-dss

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dss:<tag>

(see bioconductor-dss/tags for valid values for <tag>)

Download stats

Link to this page

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