recipe bioconductor-dss

Dispersion shrinkage for sequencing data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/DSS.html

License

GPL

Recipe

/bioconductor-dss/meta.yaml

Links

biotools: dss

DSS is an R library performing differntial analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core of DSS is a new dispersion shrinkage method for estimating the dispersion parameter from Gamma-Poisson or Beta-Binomial distributions.

package bioconductor-dss

Versions

2.38.0-0,  2.36.0-0,  2.34.0-0,  2.32.0-1,  2.30.0-0,  2.28.0-0,  2.26.0-0

Depends

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-biocparallel >=1.24.0,<1.25.0

• bioconductor-bsseq >=1.26.0,<1.27.0

• bioconductor-delayedarray >=0.16.0,<0.17.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.0,<4.1.0a0

Required By

• bioconductor-methylsig

• bioconductor-methcp

• bioconductor-dmrcate

• bioconductor-kissde

• bioconductor-metaseqr2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dss

and update with:

conda update bioconductor-dss

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dss:<tag>

(see bioconductor-dss/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-dss/README.html)