-
recipe
bioconductor-dss
Dispersion shrinkage for sequencing data
- Homepage
- License
GPL
- Recipe
- Links
biotools: dss
DSS is an R library performing differntial analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core of DSS is a new dispersion shrinkage method for estimating the dispersion parameter from Gamma-Poisson or Beta-Binomial distributions.
-
package
bioconductor-dss
¶ -
- Versions
2.38.0-0
,2.36.0-0
,2.34.0-0
,2.32.0-1
,2.30.0-0
,2.28.0-0
,2.26.0-0
- Depends
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-biocparallel
>=1.24.0,<1.25.0
bioconductor-bsseq
>=1.26.0,<1.27.0
bioconductor-delayedarray
>=0.16.0,<0.17.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-dss
and update with:
conda update bioconductor-dss
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dss:<tag>
(see bioconductor-dss/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dss/README.html)