recipe bioconductor-easierdata

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/easierData.html

License

MIT + file LICENSE

Recipe

/bioconductor-easierdata/meta.yaml

Access to internal data required for the functional performance of easier package and exemplary bladder cancer dataset with both processed RNA-seq data and information on response to ICB therapy generated by Mariathasan et al. "TGF-B attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells", published in Nature, 2018 [doi:10.1038/nature25501](https://doi.org/10.1038/nature25501). The data is made available via [`IMvigor210CoreBiologies`](http://research-pub.gene.com/IMvigor210CoreBiologies/) package under the CC-BY license.

package bioconductor-easierdata

Versions

1.0.0-0

Depends

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

Required By

• bioconductor-easier

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-easierdata

and update with:

conda update bioconductor-easierdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-easierdata:<tag>

(see bioconductor-easierdata/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-easierdata/README.html)