recipe bioconductor-ebsea

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/EBSEA.html

License

GPL-2

Recipe

/bioconductor-ebsea/meta.yaml

Links

biotools: ebsea, doi: 10.1038/nmeth.3252

package bioconductor-ebsea

(downloads) docker_bioconductor-ebsea

Versions

1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends bioconductor-edger

>=3.26.0,<3.27.0

Depends bioconductor-limma

>=3.40.0,<3.41.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-plyr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ebsea

and update with:

conda update bioconductor-ebsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ebsea:<tag>

(see bioconductor-ebsea/tags for valid values for <tag>)