recipe bioconductor-ebseq

An R package for gene and isoform differential expression analysis of RNA-seq data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/EBSeq.html

License:

Artistic-2.0

Recipe:

/bioconductor-ebseq/meta.yaml

Links:

biotools: ebseq, doi: 10.1093/bioinformatics/btt087

Differential Expression analysis at both gene and isoform level using RNA-seq data

package bioconductor-ebseq

Versions:

1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.1-0, 

1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.1-0,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0

Depends:

• r-base >=4.1,<4.2.0a0

• r-blockmodeling

• r-gplots

• r-testthat

Required By:

• bioconductor-ebseqhmm

• bioconductor-desubs

• bioconductor-oscope

• bioconductor-scdd

• rsem

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ebseq

and update with:

conda update bioconductor-ebseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ebseq:<tag>

(see bioconductor-ebseq/tags for valid values for <tag>)

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