recipe bioconductor-ebseq

An R package for gene and isoform differential expression analysis of RNA-seq data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/EBSeq.html

License

Artistic-2.0

Recipe

/bioconductor-ebseq/meta.yaml

Links

biotools: ebseq, doi: 10.1093/bioinformatics/btt087

Differential Expression analysis at both gene and isoform level using RNA-seq data

package bioconductor-ebseq

Versions

1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.1-0,  1.22.0-0,  1.20.0-0,  1.18.0-0, 

1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.1-0,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0

Depends

• r-base >=4.0,<4.1.0a0

• r-blockmodeling

• r-gplots

• r-testthat

Required By

• bioconductor-ebseqhmm

• rsem

• bioconductor-oscope

• bioconductor-scdd

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ebseq

and update with:

conda update bioconductor-ebseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ebseq:<tag>

(see bioconductor-ebseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ebseq/README.html)