recipe bioconductor-edge

Extraction of Differential Gene Expression

Homepage

https://bioconductor.org/packages/3.10/bioc/html/edge.html

License

MIT + file LICENSE

Recipe

/bioconductor-edge/meta.yaml

The edge package implements methods for carrying out differential expression analyses of genome-wide gene expression studies. Significance testing using the optimal discovery procedure and generalized likelihood ratio tests (equivalent to F-tests and t-tests) are implemented for general study designs. Special functions are available to facilitate the analysis of common study designs, including time course experiments. Other packages such as snm, sva, and qvalue are integrated in edge to provide a wide range of tools for gene expression analysis.

package bioconductor-edge

Versions

2.18.0-0, 2.16.0-1, 2.14.0-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-qvalue >=2.18.0,<2.19.0

• bioconductor-snm >=1.34.0,<1.35.0

• bioconductor-sva >=3.34.0,<3.35.0

• libgcc-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-jackstraw

• r-mass

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-edge

and update with:

conda update bioconductor-edge

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-edge:<tag>

(see bioconductor-edge/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-edge/README.html)