- recipe bioconductor-edge
Extraction of Differential Gene Expression
- Homepage
- License
MIT + file LICENSE
- Recipe
The edge package implements methods for carrying out differential expression analyses of genome-wide gene expression studies. Significance testing using the optimal discovery procedure and generalized likelihood ratio tests (equivalent to F-tests and t-tests) are implemented for general study designs. Special functions are available to facilitate the analysis of common study designs, including time course experiments. Other packages such as snm, sva, and qvalue are integrated in edge to provide a wide range of tools for gene expression analysis.
- package bioconductor-edge¶
-
- Versions
2.26.0-1
,2.26.0-0
,2.24.0-0
,2.22.0-1
,2.22.0-0
,2.20.0-0
,2.18.0-0
,2.16.0-1
,2.14.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-qvalue
>=2.26.0,<2.27.0
bioconductor-snm
>=1.42.0,<1.43.0
bioconductor-sva
>=3.42.0,<3.43.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-edge
and update with:
conda update bioconductor-edge
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-edge:<tag>
(see bioconductor-edge/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
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