recipe bioconductor-edger

Differential expression analysis of RNA-seq expression profiles with biological replication. Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce counts, including ChIP-seq, Bisulfite-seq, SAGE and CAGE.

License:GPL (>=2)
Links:biotools: edger
package bioconductor-edger

(downloads) docker_bioconductor-edger


3.24.1-0, 3.22.5-0, 3.20.7-0, 3.20.1-0, 3.20.0-0, 3.18.1-0, 3.16.5-0, 3.14.0-1, 3.14.0-0, 3.12.1-1, 3.12.1-0, 3.12.0-0, 3.10.5-0

Required By:


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-edger

and update with:

conda update bioconductor-edger

or use the docker container:

docker pull<tag>

(see bioconductor-edger/tags for valid values for <tag>)