Differential expression analysis of RNA-seq expression profiles with biological replication. Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce counts, including ChIP-seq, SAGE and CAGE.
|Versions||3.10.5, 3.12.0, 3.12.1, 3.14.0|
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-edger
and update with:
conda update bioconductor-edger
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-edger.