recipe bioconductor-egseadata

Gene set collections for the EGSEA package

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/EGSEAdata.html

License:

file LICENSE

Recipe:

/bioconductor-egseadata/meta.yaml

This package includes gene set collections that are used for the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing. It includes Human and Mouse versions of the MSidDB (Subramanian, et al. (2005) PNAS, 102(43):15545-15550) and GeneSetDB (Araki, et al. (2012) FEBS Open Bio, 2:76-82) collections.

package bioconductor-egseadata

(downloads) docker_bioconductor-egseadata

versions:
1.30.0-0,  1.28.0-0,  1.26.0-0,  1.25.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0, 

1.30.0-0,  1.28.0-0,  1.26.0-0,  1.25.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.17.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-egseadata

and update with::

   mamba update bioconductor-egseadata

To create a new environment, run:

mamba create --name myenvname bioconductor-egseadata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-egseadata:<tag>

(see `bioconductor-egseadata/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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