recipe bioconductor-egseadata

This package includes gene set collections that are used for the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing. It includes Human and Mouse versions of the MSidDB (Subramanian, et al. (2005) PNAS, 102(43):15545-15550) and GeneSetDB (Araki, et al. (2012) FEBS Open Bio, 2:76-82) collections.

Homepage

https://bioconductor.org/packages/3.9/data/experiment/html/EGSEAdata.html

License

file LICENSE

Recipe

/bioconductor-egseadata/meta.yaml

package bioconductor-egseadata

Versions

1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-1, 1.6.0-0

Depends

• curl >=7.64.1,<8.0a0

• r-base >=3.5.1,<3.5.2.0a0

Required By

• bioconductor-egsea

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-egseadata

and update with:

conda update bioconductor-egseadata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-egseadata:<tag>

(see bioconductor-egseadata/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-egseadata/README.html)