- recipe bioconductor-elmer
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
- Homepage
- License
GPL-3
- Recipe
ELMER is designed to use DNA methylation and gene expression from a large number of samples to infere regulatory element landscape and transcription factor network in primary tissue.
- package bioconductor-elmer¶
-
- Versions
2.18.0-0
,2.16.0-0
,2.14.0-1
,2.14.0-0
,2.12.0-0
,2.9.5-1
,2.8.0-1
,2.6.1-0
,2.4.4-1
,2.18.0-0
,2.16.0-0
,2.14.0-1
,2.14.0-0
,2.12.0-0
,2.9.5-1
,2.8.0-1
,2.6.1-0
,2.4.4-1
,2.4.4-0
- Depends
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-complexheatmap
>=2.10.0,<2.11.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-elmer.data
>=2.18.0,<2.19.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gviz
>=1.38.0,<1.39.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-multiassayexperiment
>=1.20.0,<1.21.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-tcgabiolinks
>=2.22.0,<2.23.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-elmer
and update with:
conda update bioconductor-elmer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-elmer:<tag>
(see bioconductor-elmer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-elmer/README.html)