recipe bioconductor-enhancedvolcano

Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many transcript names in the plot window as possible, thus avoiding clogging up the plot with labels that could not otherwise have been read. Other functionality allows the user to identify up to 3 different types of attributes in the same plot space via colour, shape, and shade parameter configurations.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/EnhancedVolcano.html

License

GPL-3

Recipe

/bioconductor-enhancedvolcano/meta.yaml

package bioconductor-enhancedvolcano

Versions

1.2.0-1, 1.2.0-0, 1.0.1-0

Depends

• r-base >=3.6,<3.7.0a0

• r-ggplot2

• r-ggrepel

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-enhancedvolcano

and update with:

conda update bioconductor-enhancedvolcano

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-enhancedvolcano:<tag>

(see bioconductor-enhancedvolcano/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-enhancedvolcano/README.html)