recipe bioconductor-enrichedheatmap

Making Enriched Heatmaps

Homepage

https://bioconductor.org/packages/3.11/bioc/html/EnrichedHeatmap.html

License

MIT + file LICENSE

Recipe

/bioconductor-enrichedheatmap/meta.yaml

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

package bioconductor-enrichedheatmap

Versions

1.18.2-0, 1.16.0-0, 1.14.0-1, 1.12.0-0

Depends

• bioconductor-complexheatmap >=2.4.0,<2.5.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• libstdcxx-ng >=7.3.0

• r-base >=4.0,<4.1.0a0

• r-circlize >=0.4.5

• r-getoptlong

• r-locfit

• r-matrixstats

• r-rcpp

Required By

• bioconductor-profileplyr

• hitea

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-enrichedheatmap

and update with:

conda update bioconductor-enrichedheatmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-enrichedheatmap:<tag>

(see bioconductor-enrichedheatmap/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-enrichedheatmap/README.html)