Package Recipe 'bioconductor-enrichmentbrowser'

recipe bioconductor-enrichmentbrowser¶

The EnrichmentBrowser package implements essential functionality for the enrichment analysis of gene expression data. The analysis combines the advantages of set-based and network-based enrichment analysis in order to derive high-confidence gene sets and biological pathways that are differentially regulated in the expression data under investigation. Besides, the package facilitates the visualization and exploration of such sets and pathways.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/EnrichmentBrowser.html
License: Artistic-2.0
Recipe: /bioconductor-enrichmentbrowser/meta.yaml

package bioconductor-enrichmentbrowser¶

Versions: 2.12.0-0, 2.10.11-0
Depends bioconductor-annotationdbi: >=1.44.0,<1.45.0
Depends bioconductor-biocfilecache: >=1.6.0,<1.7.0
Depends bioconductor-biocgraph: >=1.44.0,<1.45.0
Depends bioconductor-complexheatmap: >=1.20.0,<1.21.0
Depends bioconductor-deseq2: >=1.22.0,<1.23.0
Depends bioconductor-edaseq: >=2.16.0,<2.17.0
Depends bioconductor-edger: >=3.24.0,<3.25.0
Depends bioconductor-geneplotter: >=1.60.0,<1.61.0
Depends bioconductor-go.db: >=3.7.0,<3.8.0
Depends bioconductor-graph: >=1.60.0,<1.61.0
Depends bioconductor-graphite: >=1.28.0,<1.29.0
Depends bioconductor-gseabase: >=1.44.0,<1.45.0
Depends bioconductor-kegggraph: >=1.42.0,<1.43.0
Depends bioconductor-keggrest: >=1.22.0,<1.23.0
Depends bioconductor-limma: >=3.38.0,<3.39.0
Depends bioconductor-pathview: >=1.22.0,<1.23.0
Depends bioconductor-reportingtools: >=2.22.0,<2.23.0
Depends bioconductor-rgraphviz: >=2.26.0,<2.27.0
Depends bioconductor-s4vectors: >=0.20.0,<0.21.0
Depends bioconductor-safe: >=3.22.0,<3.23.0
Depends bioconductor-spia: >=2.34.0,<2.35.0
Depends bioconductor-summarizedexperiment: >=1.12.0,<1.13.0
Depends bioconductor-topgo: >=2.34.0,<2.35.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-biocmanager
Depends r-hwriter
Depends r-mass
Depends r-rappdirs
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-enrichmentbrowser

and update with:

conda update bioconductor-enrichmentbrowser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-enrichmentbrowser:<tag>

(see bioconductor-enrichmentbrowser/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-enrichmentbrowser/README.html)