recipe bioconductor-epicompare

Comparison, Benchmarking & QC of Epigenomic Datasets

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/EpiCompare.html

License:

GPL-3

Recipe:

/bioconductor-epicompare/meta.yaml

EpiCompare is used to compare and analyse epigenetic datasets for quality control and benchmarking purposes. The package outputs an HTML report consisting of three sections: (1. General metrics) Metrics on peaks (percentage of blacklisted and non-standard peaks, and peak widths) and fragments (duplication rate) of samples, (2. Peak overlap) Percentage and statistical significance of overlapping and non-overlapping peaks. Also includes upset plot and (3. Functional annotation) functional annotation (ChromHMM, ChIPseeker and enrichment analysis) of peaks. Also includes peak enrichment around TSS.

package bioconductor-epicompare

(downloads) docker_bioconductor-epicompare

Versions:

1.2.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-epicompare

and update with:

conda update bioconductor-epicompare

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-epicompare:<tag>

(see bioconductor-epicompare/tags for valid values for <tag>)

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