recipe bioconductor-epidish

Epigenetic Dissection of Intra-Sample-Heterogeneity

Homepage

https://bioconductor.org/packages/3.11/bioc/html/EpiDISH.html

License

GPL-2

Recipe

/bioconductor-epidish/meta.yaml

EpiDISH is a R package to infer the proportions of a priori known cell-types present in a sample representing a mixture of such cell-types. Right now, the package can be used on DNAm data of whole blood, generic epithelial tissue and breast tissue. Besides, the package provides a function that allows the identification of differentially methylated cell-types and their directionality of change in Epigenome-Wide Association Studies.

package bioconductor-epidish

(downloads) docker_bioconductor-epidish

Versions

2.4.0-02.2.0-02.0.2-12.0.2-01.4.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-epidish

and update with:

conda update bioconductor-epidish

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-epidish:<tag>

(see bioconductor-epidish/tags for valid values for <tag>)