recipe bioconductor-epivizr

R Interface to epiviz web app

Homepage

https://bioconductor.org/packages/3.10/bioc/html/epivizr.html

License

Artistic-2.0

Recipe

/bioconductor-epivizr/meta.yaml

Links

biotools: epivizr, doi: 10.1038/nmeth.3038

This package provides connections to the epiviz web app (http://epiviz.cbcb.umd.edu) for interactive visualization of genomic data. Objects in R/bioc interactive sessions can be displayed in genome browser tracks or plots to be explored by navigation through genomic regions. Fundamental Bioconductor data structures are supported (e.g., GenomicRanges and RangedSummarizedExperiment objects), while providing an easy mechanism to support other data structures (through package epivizrData). Visualizations (using d3.js) can be easily added to the web app as well.

package bioconductor-epivizr

(downloads) docker_bioconductor-epivizr

Versions

2.16.0-0, 2.14.0-1, 2.12.0-0, 2.10.0-0, 2.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-epivizr

and update with:

conda update bioconductor-epivizr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-epivizr:<tag>

(see bioconductor-epivizr/tags for valid values for <tag>)