recipe bioconductor-epivizrstandalone

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The ‘epivizrServer’ package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/epivizrStandalone.html

License

MIT + file LICENSE

Recipe

/bioconductor-epivizrstandalone/meta.yaml

Links

biotools: epivizrstandalone, doi: 10.1038/nmeth.3252

package bioconductor-epivizrstandalone

Versions

1.10.0-1, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-epivizr >=2.12.0,<2.13.0

• bioconductor-epivizrserver >=1.10.0,<1.11.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-base >=3.5.1,<3.5.2.0a0

• r-git2r

Required By

• bioconductor-metavizr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-epivizrstandalone

and update with:

conda update bioconductor-epivizrstandalone

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-epivizrstandalone:<tag>

(see bioconductor-epivizrstandalone/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-epivizrstandalone/README.html)