- recipe bioconductor-epivizrstandalone
Run Epiviz Interactive Genomic Data Visualization App within R
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/epivizrStandalone.html
- License:
MIT + file LICENSE
- Recipe:
- Links:
biotools: epivizrstandalone, doi: 10.1038/nmeth.3252
This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.
- package bioconductor-epivizrstandalone¶
-
- Versions:
1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-1
,1.10.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-epivizr
>=2.24.0,<2.25.0
bioconductor-epivizrserver
>=1.22.0,<1.23.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-epivizrstandalone
and update with:
conda update bioconductor-epivizrstandalone
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-epivizrstandalone:<tag>
(see bioconductor-epivizrstandalone/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-epivizrstandalone/README.html)